@layer default, custom;
:root {
  /* Styling of features */
  --gb-feature-stroke-width: 1px;
  --gb-feature-icon-size: 1.6rem;
  --gb-feature-stroke-width: 1px;

  /* Start codon (sequence view only) */
  --gb-feature-start-fill-color: #009900;
  --gb-feature-start-text-color: #ffffff;
  --gb-feature-for-start-icon: "\21A6";
  --gb-feature-rev-start-icon: "\21E4";

  /* Stop codon (sequence view only) */
  --gb-feature-stop-fill-color: #cc0000;
  --gb-feature-stop-text-color: #ffffff;
  --gb-feature-for-stop-icon: "\21E5";
  --gb-feature-rev-stop-icon: "\21A4";

  /* Forward and reverse strand color */
  --gb-feature-for-fill-color: #777777aa;
  --gb-feature-for-stroke-color: #777777;
  --gb-feature-for-text-color: #444444;
  --gb-feature-rev-fill-color: #444444aa;
  --gb-feature-rev-stroke-color: #444444;
  --gb-feature-rev-text-color: #444444;

  /* Feature colors */
  --gb-feature-cds-fill-color: #DADADA;
  --gb-feature-cds-stroke-color: #777777;
  --gb-feature-trna-stroke-color: #006EB7;
  --gb-feature-trna-fill-color: #cce2f1;
  --gb-feature-rrna-stroke-color: #B61F29;
  --gb-feature-rrna-fill-color: #f0d2d4;
  --gb-feature-ncrna-stroke-color: #1FA138;
  --gb-feature-ncrna-fill-color: #d2ecd7;
  --gb-feature-stroke-reg: #ECAF00;
  --gb-feature-fill-reg: #fbefcc;
  --gb-feature-stroke-pseudo: #c5c3c3;
  --gb-feature-fill-pseudo: #ffffff;


  /* Styling for extras */
  --gb-extra-fill-color: #333333;
  --gb-extra-stroke-color: #333333;
  --gb-extra-text-color: #ffffff;
  --gb-extra-height-factor: 0.8;

  /* Styling of the selection frame */
  --gb-selection-stroke-color: #B61F29;
  --gb-selection-stroke-width: 1px;
  --gb-selection-fill-color: #44363633;
  --gb-selection-handle-size: 1rem;

  /* Styling of the tooltip */
  --gb-tooltip-border: 1px solid #333333;
  --gb-tooltip-shadow: 2px 2px 5px #00000033;
  --gb-tooltip-fill-color: #ffffffcc;

  /* Sizes of the map elements */
  --gb-svg-height: 120;
  --gb-svg-track-height: 30;
  --gb-svg-axis-size: 0;
  --gb-canvas-height: 60;
  --gb-canvas-track-height: 20;
  

}
@layer default {

  .genomebrowser-collapse{
    background-color: #ffffff !important;
  }

  .gb-map-wrapper {
    user-select: none;
    border: 1px solid #afafaf;
    position: relative;
    box-shadow: 0px 2px 2px 0px rgba(0, 0, 0, 0.15);
    max-width: 100%;
    background-color: #fff;
  }

  .gb-map-wrapper .gb-map-tooltip {
    position: absolute;
    background-color: var(--gb-tooltip-fill-color, #ffffffcc);
    z-index: 9999;
    border: 1px solid #afafaf;
    border-radius: 5px;
    box-shadow: 0px 2px 2px 0px rgba(0, 0, 0, 0.15);
    min-width: 200px;
    padding: 0.5rem;
  }

  .gb-map-wrapper .gb-map-svg,
  .gb-map-wrapper .gb-map-canvas {
    display: block;
    max-width: 100%;
  }

  .gb-map-wrapper .gb-map-svg text {
    pointer-events: none;
  }
  .gb-map-wrapper .gb-map-svg polygon {
    cursor: pointer;
    stroke-width: var(--gb-feature-stroke-width, 1px);
  }

  .gb-map-wrapper .gb-map-svg polygon:hover,
  .gb-map-wrapper .gb-map-svg polygon.selected {
    stroke-width: var(--gb-highlight-stroke-width, 2.5px);
  }
  .gb-map-wrapper .gb-map-svg polygon.selected {
    stroke: var(--gb-highlight-stroke-color,#B61F29);
  }

  .gb-map-wrapper .gb-map-canvas {
    cursor: crosshair;
  }
  .gb-map-wrapper .gb-map-selection {
    position: absolute;
    display: inline-block;
    border: var(--gb-selection-stroke-width, 1px) solid
      var(--gb-selection-stroke-color, #B61F29);
    border-radius: 5px;
    background: var(--gb-selection-fill-color, #ff000033);
    bottom: 120px;
  }

  .gb-map-wrapper polygon.for {
    fill: var(--gb-feature-for-fill-color, #777777aa);
    stroke: var(--gb-feature-for-stroke-color, #777777);
    stroke-width: var(--gb-feature-for-stroke-color, 1px);
  }
  .gb-map-wrapper polygon.rev {
    fill: var(--gb-feature-rev-fill-color, #777777aa);
    stroke: var(--gb-feature-rev-stroke-color, #777777);
    stroke-width: var(--gb-feature-rev-stroke-color, 1px);
  }
  .gb-map-wrapper text.for {
    fill: var(--gb-feature-for-text-color, #ffffff);
    font-size: 1.2rem;
  }
  .gb-map-wrapper text.rev {
    fill: var(--gb-feature-rev-text-color, #ffffff);
    font-size: 1.2rem;
  }
  .gb-map-wrapper polygon.selected {
    stroke-width: var(--gb-highlight-stroke-width, 3px);
  }

  .gb-map-wrapper polygon.clicked {
    stroke-width: var(--gb-highlight-stroke-width, 3px);
  }

  .gb-map-wrapper polygon.highlight {
    fill: var(--gb-highlight-fill-color, #ffcc00aa);
    stroke: var(--gb-highlight-stroke-color, #ffcc00);
    stroke-width: var(--gb-highlight-stroke-width, 3px);
  }
  .gb-map-wrapper text.highlight {
    fill: var(--gb-highlight-text-color, #000000);
  }

  .gb-map-svg:hover,
  .gb-map-selection:hover {
    cursor: grab;
  }
  .gb-map-svg.grabbing,
  .gb-map-selection.grabbing {
    cursor: grabbing;
  }
  
  .gb-map-selection .gb-map-righthandle {
      position: absolute;
      display: inline-block;
      width: var(--gb-selection-handle-size, 1rem);
      height: 0;
      margin-top: 29px;
      margin-right: -5px;
      margin-bottom: 50px;
      border-top: 30px solid transparent;
      border-left: 10px solid #B61F29;
      border-bottom: 30px solid transparent;
      cursor: col-resize;
  }

    .gb-map-selection .gb-map-lefthandle {
      position: absolute;
      display: inline-block;
      width: var(--gb-selection-handle-size, 1rem);
      height: 0;
      margin-top: 29px;
      margin-left: -5px;
      margin-bottom: 50px;
      border-top: 30px solid transparent;
      border-right: 10px solid #B61F29;
      border-bottom: 30px solid transparent;
      cursor: col-resize;
  }

  .gb-map-selection .gb-map-lefthandle {
    translate: -50% -50%;
  }
  .gb-map-selection .gb-map-righthandle {
    right: 0%;
    translate: 50% -50%;
  }

  .gb-seq-wrapper {
    margin-top: 2rem;
    border: 1px solid #afafaf;
    box-shadow: 0px 2px 2px 0px rgba(0, 0, 0, 0.15);
    padding-bottom: 1rem;
    margin-bottom: 1rem;
    border-radius: 5px;
  }

  .gb-seq-wrapper hgroup {
    margin-left: 1rem;
    margin-top: 1rem;
  }

  .gb-seq-wrapper #close-seq-button {
    margin: 1rem !important;
    color: #464646 !important;
  }

  .gb-seq-wrapper .gb-seq {
    display: inline-block;
    font-size: 0.8rem;
    line-height: 2.5rem;
    margin-inline: auto;
  }
  .gb-seq-wrapper .start.for,
  .gb-seq-wrapper .stop.rev {
    position: relative;
    background: var(--gb-feature-start-fill-color, green);
    color: var(--gb-feature-start-text-color, #ffffff);
    font-weight: 600;
  }
  .gb-seq-wrapper .start:before,
  .gb-seq-wrapper .stop:before {
    content: "";
    position: absolute;
    color: black;
    width: fit-content;
    font-size: var(--gb-feature-icon-size, inherit);
    top: 50%;
    font-weight: 100;
  }
  .gb-seq-wrapper .stop.for,
  .gb-seq-wrapper .start.rev {
    position: relative;
    background-color: var(--gb-feature-stop-fill-color, #B61F29);
    color: var(--gb-feature-stop-text-color, #ffffff);
    font-weight: 600;
  }
  .gb-seq-wrapper .for.start:before {
    content: var(--gb-feature-for-start-icon, "\21A6");
  }
  .gb-seq-wrapper .for.stop:before {
    content: var(--gb-feature-for-stop-icon, "\21E5");
  }
  .gb-seq-wrapper .rev.start:before {
    content: var(--gb-feature-rev-start-icon, "\21E4");
  }
  .gb-seq-wrapper .rev.stop:before {
    content: var(--gb-feature-rev-stop-icon, "\21A4");
  }
  .gb-seq-wrapper .for {
    background:  #777777aa;
    color: #ffffff;
  }
  .gb-seq-wrapper .rev {
    background: #777777aa;
    color: #ffffff;
  }

  .gb-seq-wrapper .gb-seq-gutter-right,
  .gb-seq-wrapper .gb-seq-gutter-left {
    position: absolute;
    top: -0.4rem;
    margin: 0 auto;
    font-size: 0.6rem;
    color: #999;
    word-spacing: 100vw;
    line-height: 2.5rem;
    pointer-events: none;
    user-select: none;
  }
  .gb-seq-wrapper .gb-seq-gutter-right {
    text-align: right;
  }
  .gb-seq-wrapper .gb-seq-gutter-left {
    text-align: left;
  }
  .gb-seq-wrapper .gb-seq-overlay {
    pointer-events: none;
    user-select: none;
    position: absolute;
    margin: 0 auto;
    height: 100%;
    width: 100%;
  }

  .gb-seq-wrapper .extra {
    box-sizing: content-box;
    position: absolute;
    display: block;
    transform: translate(-4px, -3px);
    font-size: 0.8rem;
    border: 4px solid var(--color, #333333aa);
  }
  .gb-seq-wrapper .extra:before {
    content: attr(title);
    color: var(--color, #333);
    top: -1.1rem;
  }
  .gb-seq-wrapper .extra:after {
    top: 1rem;
    color: var(--color, #333);
    content: attr(data-below);
  }
  .gb-seq-wrapper .extra:before,
  .gb-seq-wrapper .extra:after {
    position: absolute;
    display: flex;
    justify-content: center;
    align-items: center;
    width: 100%;
  }
  .gb-seq-wrapper .extra.split-start {
    border-left-style: dotted;
  }
  .gb-seq-wrapper .extra.split-end {
    border-right-style: dotted;
  }
  .gb-seq-wrapper .gb-seq-container {
    background-color: #fff;
    display: flex;
    position: relative;
    justify-content: center;
    font-family: "Courier New", Courier, monospace;
    font-size: 1rem;
    text-align: left;
    white-space: pre-line;
    padding-block: 5px;
    max-height: 100%;
  }
  .gb-seq-wrapper #ruler {
    font-family: "Courier New", Courier, monospace;
    font-size: 0.8rem;
    width: 1ch;
    height: 0.8rem;
  }

  #genomebrowser .contig_btn {
    display: inline-block;
    align-items: center;
    margin: 0.5rem !important;
    cursor: pointer;
  }

  #genomebrowser .coord {
    font-size: 1.2rem;
  }

  #genomebrowser .name_input{
    display: flex;
    justify-content: space-between;
  }

  #genomebrowser p {
    margin-top: 0px;
    margin-bottom: 5px;
  }

  #genomebrowser .input {
    display: flex;
    justify-content: flex-end;
    align-items: end;
  }

  #genomebrowser h4 {
    margin: 1rem 2rem 1rem 0rem !important;
    font-size: 1.5rem !important;
  }

  #genomebrowser h3 {
    margin: 2rem 2rem 1rem 0rem !important;
    font-size: 1.8rem !important;
  }

  #genomebrowser summary {
    margin: 1rem 1rem 1rem 0rem !important;
    color: #464646 !important;
    background-color: #f7f7f7 !important;
  }

  

  #genomebrowser summary {
    /* Firefox */
    list-style-type: none;
  }

  #genomebrowser summary::-webkit-details-marker {
    /* Chrome */
    display: none;
  }

  #genomebrowser summary::marker {
    display: none;
  }

  #genomebrowser details[open] summary::after {
  content: attr(data-open);
  }

  #genomebrowser details:not([open]) summary::after {
  content: attr(data-close);
  }

  .genomebrowser-panel h4 {
    margin-left: 0 !important;
    font-size: 1.5rem !important;
  }

  #genomebrowser .w-150 {
      margin-left: 0.8rem;
  } 

  #genomebrowser > #legend {
    display: flex;
    flex-wrap: wrap;
    gap: 1rem;
    padding: 0;
    margin-bottom: 2rem;
    list-style: none;
    font-size: 0.9rem;
  }
  #genomebrowser > #legend:empty {
    display: none;
  }
  #genomebrowser > #legend:not(:empty):before {
    content: "Legend: ";
    font-weight: 700;
    margin-top: 5px;
  }
  #genomebrowser > #legend li {
    display: flex;
    justify-content: center;
    margin-top: 5px;
    gap: 0.5rem;
  }
  #genomebrowser > #legend li span {
    display: inline-block;
    width: 0.9rem;
    height: 0.9rem;
    margin-top: 2px;
    border: 1px solid var(--stroke, black);
    background-color: var(--fill, #ccc);
  }

  #genomebrowser .table {
    border: 0px !important;
  }

  .gb-search-wrapper{
    display: block;
    max-height: 25rem;
    overflow-y: scroll;
    border: 1px solid #afafaf;
    border-radius: 5px;
    border-collapse: separate !important;
    box-shadow: 0px 2px 2px 0px rgba(0, 0, 0, 0.15);
  }

  #genomebrowser_header{
    font-size: 1.8rem !important;
    font-weight: 500;
    background-color: #dfdfdf !important;
  }

  .browser-title {
    margin-left: 1rem;
  }

  #genomebrowser {
    margin-bottom: 2rem !important;
  }

  #genomebrowser .fixedTableHeader {
    width: 100% !important;
  }
   
  #genomebrowser .gb-search-table {
    width: 100% !important;
  }

  #genomebrowser .gb-search-table thead {
    text-align: left;
  	position: sticky;
  	top: 0;
  }

  #genomebrowser .table th {
    background: #dfdfdf;
    cursor: default !important; 
    padding: 1rem 1.4rem !important;
  }

  #genomebrowser .table tr {
    cursor: pointer;
  }

  #genomebrowser .table td {
    padding: 1rem 1.4rem !important;
  }

  #genomebrowser #contigs {
    display: flex;
    flex-wrap: wrap;
    margin-bottom: 0.5rem;
    margin-left: 0.5rem;
    margin-right: 0.5rem;
    max-height: 14rem;
    overflow-y: scroll;
  }

  #genomebrowser #contigs_box {
    border: 1px solid #afafaf;
    border-radius: 5px;
    box-shadow: 0px 2px 2px 0px rgba(0, 0, 0, 0.15);
    margin-top:2rem;
    margin-bottom: 2rem;
    margin-right: 1rem;
  }

  #genomebrowser #info_box {
    border: 1px solid #afafaf;
    border-radius: 5px;
    box-shadow: 0px 2px 2px 0px rgba(0, 0, 0, 0.15);
    padding: 0rem 1rem 1rem 1rem;
    margin-top:2rem;
    margin-bottom: 2rem;
    min-width: 300px;
    }  

  #genomebrowser h5 {
    margin-top: 0.5rem !important;
    margin-bottom: 0.1rem !important;
    font-weight: normal !important;
    font-size: 1.5rem !important;
  }

  #genomebrowser .info_badge {
    margin-top: 0.5rem;
  }

  #genomebrowser #contigs_box h5 {
    margin-left: 1rem;
  }

  #genomebrowser #contigs_info_box {
    display: flex;
    justify-content: space-between;

  }

  #genomebrowser .contig_name {
    align-self: end;
  }


  #genomebrowser .type_filter, .dropdown_p {
    cursor: pointer !important;
  }

  #genomebrowser .btn-toolbar {
    margin-bottom: 1rem !important;
  }

  #genomebrowser .deactivate-filter {
    cursor: pointer !important;
    margin-right: 0.5rem;
    margin-bottom: 0.5rem;
  }

}